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17 results for “sequence alignment”
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Research ArticleOpen accessPhrase in the titleNimble Protein Sequence Alignment in Grid (NPSAG)K. Somasundaram, S. RadhakrishnanIn Bio-Informatics application, the analysis of protein sequence is a kind of computation driven science which has rapidly and quickly growing biological data. Also databases used in these applications are heterogeneous in nature and alignment of protein sequence using physical techniques is expensive, slow and results are not always guaranteed/accurate. So this application requires cross-platform, cost-effective and more computing power … …Journal of Computer Science, Vol. 4, Issue 1 · 31 Jan 2008 · 6,921 accessesView PDFCite
Research ArticleOpen accessIn the keywordsUsing Threads to Overcome Synchronization Delays in Parallel Multiple Progressive Alignment AlgorithmsEvandro A. Marucci, Geraldo F.D. Zafalon, Julio C. Momente et al.Problem statement: The parallelization of multiple progressive alignment algorithms is a difficult task. All known methods have strong bottlenecks resulting from synchronization delays. This is even more constraining in distributed memory systems, where message passing also delays the interprocess communication. Despite these drawbacks, parallel computing is becoming increasingly necessary to perform multiple sequence alignment. Approach: In this study, it is … …Current Research in Bioinformatics, Vol. 1, Issue 1 · 8 Mar 2012 · 14,192 accessesView PDFCite
Research ArticleOpen accessIn the keywordsArabic Personal Name Matching: Names Written using Latin AlphabetAttia Nehar, Slimane Bellaouar, Djelloul Ziadi, Khaled Moulay OmarAbstract: In many Arab countries’ public administrations, Arabic personal names are written with Latin alphabet, generally, in various ways by different writers. This has led to many problems when it comes to connecting these administrations. The aim of this study was to propose two new approaches for the pairwise matching of Arabic personal names. The first approach is based on … …Journal of Computer Science, Vol. 17, Issue 9 · 29 Sep 2021 · 7,602 accessesView PDFCite
Research ArticleOpen accessIn the abstractFace Verification for Person Re-Identification from Surveillance Camera and Drone-based VideosVimala Mathew, K. Ramesh, Tom Toby, Anu Mary ChackoPerson re-identification in surveillance camera videos is attracting widespread interest due to its increasing number of applications. It is being applied in the field of security, healthcare, product manufacturing, product sales and more. Though there are a variety of methods to do person re-identification, face verification-based methods are very much effective. In this study, a deep learning framework to perform … …Journal of Computer Science, Vol. 17, Issue 7 · 28 Jul 2021 · 7,317 accessesView PDFCite
Research ArticleOpen accessIn the abstractMolecular Characterization and Differentiation of Proteases Isolated from Different Aspergillus Fungal SpeciesSamia Abd Allah Abdal-Aziz, Safaa M. AliA comparative molecular study of Aperigiullus protease using sequence of protease gene representative 25 different Aspergillus species (Aspergillus fumigatus, Aspergillus oryzae, Aspergillus flavus, Aspergillus novofumigatus, Aspergillus viridinutans, Aspergillus pseudotamarii, Aspergillus clavatus, Aspergillus sojae, Aspergillus fischeri, Aspergillus caelatus, Aspergillus novofumigatus, Aspergillus campestris, Aspergillus costaricaensis, Aspergillus candidus, Aspergillus neoniger, Aspergillus mulundensis, Aspergillus ibericus, Aspergillus niger, Aspergillus piperis, Aspergillus eucalypticola, Aspergillus vadensis, Aspergillus … …OnLine Journal of Biological Sciences, Vol. 21, Issue 1 · 11 Feb 2021 · 6,649 accessesView PDFCite
Research ArticleOpen accessIn the abstractAmino Acid Sequence of Amylase Type Alpha, MiAmy, from Ok-Rong Mango (Mangifera indica Linn. cv. Ok-Rong)Raksmont Ubonbal, Saijai Posoongnoen, Jureerut Daduang et al.The 594-amino acid residue sequence of α-amylase, MiAmy, from the Ok-rong mango (Mangifera indica Linn. cv. Ok-rong), in the ripening stage, was determined through Reverse Transcription Polymerase Chain Reaction (RT-PCR). Sequence alignments and evolutionary tree analyses revealed its high similarity to plastid α-amylase from many other plants. The sequence was revealed to have four conserved regions with catalytic amino acid … …American Journal of Biochemistry and Biotechnology, Vol. 11, Issue 3 · 19 Aug 2015 · 7,215 accessesView PDFCite
Research ArticleOpen accessIn the abstractIn Silico Characterization and Motif Election of Neurotoxins from Snake VenomMahmudul Hasan, Ziaul Faruque Joy, Elius Hossain Bhuiyan, Md Shiful IslamSnake venom is a mixture of many biological components. Snakes usually use their venomic armory to tackle different prey and predators in adverse natural world. Among various components of the snake venom, neurotoxins play an important role in exerting effect by blocking the neuromuscular transmission through selective binding to muscle nicotinic Acetyl-Choline Receptors (nAChR). A set of 30 reference protein … …American Journal of Biochemistry and Biotechnology, Vol. 11, Issue 2 · 2 Mar 2015 · 7,702 accessesView PDFCite
Research ArticleOpen accessIn the abstractHOMOLOGY MODELING AND MOLECULAR DYNAMICS STUDIES OF EC1 DOMAIN OF VE-CADHERIN TO ELUCIDATE DOCKING INTERACTION WITH CADHERIN-DERIVED PEPTIDEVivitri Dewi Prasasty, Usman Sumo Friend Tambunan, Teruna Jaya SiahaanVE-cadherin is a protein in the cadherin family that is found at the adherens junctions of the microvessel endothelial cells of the Blood-Brain Barrier (BBB). It is recognized as the homotypic cell adhesion molecules and there is limited structural information on how VE-cadherins mediate cell-cell adhesion. It has been shown that the EC1 domain of cadherins is important for the … …OnLine Journal of Biological Sciences, Vol. 14, Issue 2 · 25 Jun 2014 · 7,530 accessesView PDFCite
Research ArticleOpen accessIn the abstractA Survey of Compute Intensive Algorithms for Ribo Nucleic Acids Structural DetectionRa’ed Al-Khatib, Rosni Abdullah, Nur’Aini Abdul RashidProblem statement: Finding an accurate RNA structural alignment from primary sequence due to it is time consuming and computationally NP-hard problem is a major bioinformatics challenge. According to our investigation majority of current researches were concerned on achieving faster execution time, improving space complexity and better cache management. Recently one research introduced cache-efficient Chip Multiprocessor (CMP) algorithms with good speed-up … …Journal of Computer Science, Vol. 5, Issue 10 · 31 Oct 2009 · 6,458 accessesView PDFCite
Research ArticleOpen accessIn the abstractGenome Sequence Analysis: A SurveyHassan Mathkour, Muneer AhmadProblem statement: Sequence analysis problems are NP hard and need optimal solutions. Interesting problems include duplicate sequence detection, sequence matching by relevance, sequence analysis using approximate comparison in general or using tools i.e., Matlab and multi-lingual sequence analysis. The usefulness of these operations is highlighted and future expectations are described. Approach: This study described the concepts, tools, methodologies, algorithms being … …Journal of Computer Science, Vol. 5, Issue 9 · 30 Sep 2009 · 6,830 accessesView PDFCite