3 results for “gillespie algorithm”

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Research ArticleOpen accessPhrase in the titleExperimenting the Simulation Strategy of Membrane Computing with Gillespie Algorithm by Using Two Biological Case StudiesRavie Chandren Muniyandi, Abdullah Mohd ZinProblem statement: The evolution rules of membrane computing have been applied in a nondeterministic and maximally parallel way. In order to capture these characteristics, Gillespie’s algorithm has been used as simulation strategy of membrane computing in simulating biological systems. Approach: This study was carried to discuss the simulation strategy of membrane computing with Gillespie algorithm in comparison to the simulation … …Journal of Computer Science, Vol. 6, Issue 5 · 31 May 2010 · 6,941 accessesView PDF Cite

Research ArticleOpen accessIn the keywordsMembrane Computing as a Modeling Tool for Discrete SystemsRavie Chandren Muniyandi, Abdullah Mohd. ZinProblem statement: Discrete systems have been modeled by using Ordinary Differential Equation (ODE) in which the variation of concentration of an object was modeled as continuous and deterministic manner, contrary to the real behaviors of such systems. Although, this approaches able to generate the general behavior of the system, the specific discrete processes and stochastic behaviors in the system have … …Journal of Computer Science, Vol. 7, Issue 11 · 24 Aug 2011 · 6,793 accessesView PDF Cite

Research ArticleOpen accessIn the keywordsModeling A Multi-Compartments Biological System with Membrane ComputingRavie Chandren Muniyandi, Abdullah Mohd. ZinProblem statement: Most of the biological systems have been hierarchical in structure with processes interacting between different compartments. Membrane computing formalism has provided modeling capabilities in representing the structure of biological systems. Approach: This study was carried to investigate the modeling of a multi-compartment biological system by using membrane computing formalism. The hormone-induced calcium oscillations in liver cells which was … …Journal of Computer Science, Vol. 6, Issue 10 · 10 Aug 2010 · 7,256 accessesView PDF Cite