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39 results for “Phylogenetic Analysis”
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Research ArticleOpen accessPhrase in the titlePHYLOGENETIC ANALYSIS OF THE SWINE LEUKOCYTE ANTIGEN-6 GENE GENERATED FROM SPLEENTISSUE OF KOREAN NATIVE PIGJaeyoung Kim, Hyojun Park, Yoonchung Choi, Hoyoung ChungThis study was aimed to search genetic variants, to investigate phylogenetic relationships between pig breeds and to provide basic genetic information of Korean Native Pigs (KNP) using the variations of the Swine Leukocyte Antigen-6 (SLA-6) gene. Cloning of the Swine Leukocyte Antigen (SLA)-6 gene in the MHC non-classical region was performed with spleen tissues of Korean Native Pigs (KNP). Sequencing … …American Journal of Animal and Veterinary Sciences, Vol. 9, Issue 1 · 22 Feb 2014 · 7,234 accessesView PDFCite
Research ArticleOpen accessIn the keywordsComparison of IncL/M Plasmids Using the Neighbor-Joining Method on Basis repA and excA GenesTouati Abdelaziz, Mairi AssiaThe aim of this study is to make comparison of IncL/M groups on basis of two genes candidates’ repA and excA genes. The sequences of 27 plasmids were compared using the neighbor-joining method. This method was used to construct a phylogenetic tree for the nucleotide sequences of two genes (repA and excA), using the program MEGA X software. The evolutionary … …Current Research in Bioinformatics, Vol. 8, Issue 1 · 27 Feb 2020 · 7,088 accessesView PDFCite
Research ArticleOpen accessIn the keywordsSeparation and Identification of Two Fungal Strains in Stored MaizeXiaoyu Yue, Lynne McLandsborough, Jian Zou, Xueqin GaoThe microbiological spoilage of stored grain is important for human health and economic loss. Two major predominant grain spoilage fungi (M15 and M16) were isolated from maize from a granary in China. Morphological observation of the fungal isolates, analysis of their ITS sequences and construction of their phylogenetic trees were conducted on these two strains, which were identified as Fusarium … …American Journal of Biochemistry and Biotechnology, Vol. 13, Issue 3 · 3 Aug 2017 · 7,331 accessesView PDFCite
Research ArticleOpen accessIn the keywordsMolecular Evidence for the Association of a Strain of Uganda Variant of East African Cassava Mosaic Virus to Symptom Severity in Cassava (Manihot esculenta Crantz) Fields in TogoK. D. Adjata, E. Muller, M. Peterschmitt et al.Problem statement: This study was carried out to demonstrate that the severity of Cassava Mosaic Disease (CMD) in Togo, is not only influenced by synergism between cassava Begomoviruses in presence, but essentially by recombination between the different Begomoviruses infecting cassava. Approach: Foliar samples presenting typical biological features of Begomoviruses infection were collected from cassava and wild infected plants from different … …American Journal of Biochemistry and Biotechnology, Vol. 5, Issue 4 · 31 Dec 2009 · 7,416 accessesView PDFCite
Literature ReviewOpen accessIn the keywordsA Systematic Review of the Prevalence of Avian Hepatitis E Virus in Bird’s Husbandry Worldwide, 2000-2023 Prevalence of Avian Hepatitis E VirusJorge Eduardo Forero Duarte, Leonardo Alzate Mejía, Jaiberth Antonio Cardona-AriasAvian Hepatitis E virus (aHEV) constitutes a serious animal health problem and involves significant losses in poultry production; however, epidemiological evidence is scattered. Analyze the prevalence of aHEV infection in bird husbandry and its histopathological and phylogenetic characteristics based on scientific publications worldwide from 2000- 2023.Systematic review applying the Johanna Briggs Institute guidelines and the PRISMA guide. Exhaustiveness, reproducibility, and … …American Journal of Animal and Veterinary Sciences, Vol. 19, Issue 4 · 27 Nov 2024 · 4,150 accessesView PDFCite
Research ArticleOpen accessIn the keywordsCharacterization of Bacterial Strains Isolated Through Microbial Profiling of Urine SamplesPoulomi Nandy, A. R. Thakur, S. Ray ChaudhuriThe present study was conducted to determine the microbial profile in urine samples. Differential and selective chromogenic culture media were used for the rapid detection, identification and enumeration of urinary tract pathogens namely, E. coli, Pseudomonas aeruginosa, Klebsiella pneumoniae, Staphylococcus aureus, Enterococcus faecalis, Proteus mirabilis. Urine samples of normal healthy individuals as well as patients with Urinary Tract Infection (UTI) … …OnLine Journal of Biological Sciences, Vol. 7, Issue 1 · 31 Dec 2007 · 7,556 accessesView PDFCite
Research ArticleOpen accessIn the abstractMolecular Identification and Antioxidant Profiling of Penicillium heteringtonii EUA-017 from Mangrove (Avicennia alba) in West Sumatra, IndonesiaAnthoni Agustien, Djong Hon Tjong, Yetria Rilda et al.Mangrove ecosystems harbor diverse endophytic fungi that produce bioactive secondary metabolites with potential antioxidant activities. This study aimed to identify an endophytic fungal isolate (EUA-017) from Avicennia alba mangroves in West Sumatra, Indonesia, and characterize its antioxidant metabolites. Molecular identification was performed using internal transcribed spacer (ITS) region sequencing. Secondary metabolites from ethyl acetate extracts were characterized using Fourier-transform infrared … …OnLine Journal of Biological Sciences, Vol. 25, Issue 4 · 25 Mar 2026 · 1,410 accessesView PDFCite
Research ArticleOpen accessIn the abstractBiomolecular Identification of Bacteria Endophytic From Betel Leaf in Jambi City Forest Park Area as Antibiotic-Producing PotentialArzita, Miranti Sari Fitriani, Nyimas Myrna Elsa Fathia et al.Background and Objective: Muhammad Sabki City Forest Park in Jambi City has three types of betel plants that contain endophytic bacteria. In 2021, six isolates of endophytic bacteria with the potential for producing antibiotics (halo zone above 10 mm) have been isolated, which can kill Gram-negative (Escherichia coli) and Gram-positive (Staphylococcus aureus) test bacteria. that are 5 (five) isolates derived … …OnLine Journal of Biological Sciences, Vol. 25, Issue 4 · 15 Feb 2026 · 1,234 accessesView PDFCite
Research ArticleOpen accessIn the abstractGenetic Diversity of Leifsonia xyli Subsp. xyli Causing Ratoon Stunting Diseases of Sugarcane in Indonesia Using Intergenic Spacer Region Sequence AnalysisSisca Prayudani Usman, Abdul Latief Abadi et al.Leifsonia xyli subsp xyli (Lxx) is the cause of Ratoon Stunting Disease (RSD) on sugarcane and it considers as a quarantine pest in certain regions of Indonesia. RSD is a systemic disease that causes severe cane yield loss. Information about genetic diversity of this bacterial pathogen in Indonesia is limited. While global trading of sugar cane seed may facilitate the … …OnLine Journal of Biological Sciences, Vol. 25, Issue 2 · 23 Jun 2025 · 3,351 accessesView PDFCite
Research ArticleOpen accessIn the abstractComparative Genomics of Xylella fastidiosa Subsp. Pauca and Insights on its Current and Potential Movements in EcuadorCarlos Bolanos-Carriel, Eliana Granja Guerra, Jaris Veneros et al.Xylella fastidiosa subsp. Pauca causes Coffee Leaf Scorch (CLS). It is a major threat to coffee production in most South and Central American countries. X. fastidiosa is prone to intersubspecific recombination, and it is believed that this species became pathogenic in citrus and coffee due to recent mutation events and gene flow between closely related strains. CLS epidemics have not … …OnLine Journal of Biological Sciences, Vol. 25, Issue 1 · 23 Nov 2024 · 6,172 accessesView PDFCite