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58 articles for “Structure Prediction”
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Research ArticleOpen accessPhrase in the titleProtein Secondary Structure Prediction using Hybrid Recurrent Neural NetworksRomana Rahman Ema, Akhi Khatun, Md. Alam Hossain et al.The most important and challenging problem in bioinformatics is protein secondary structure prediction. The molecules of all protein organisms have three-dimensional (primary, secondary, 3-D) structures which are completely recognized by the sequence of amino acids. Protein secondary structure attributes to the polypeptide backbone of the local configuration of proteins. Most generally, the second-level prediction is indicated such as: If there … …Journal of Computer Science, Vol. 18, Issue 7 · 14 Jul 2022 · 7,332 accessesView PDFCite
Research ArticleOpen accessPhrase in the titleStructure Prediction and Binding Site Analysis of Hepatotoxic Microcystin-LR Degrading MlrC-Like Protein from Burkholderia sp. using Computational ApproachesDhananjaya P. Singh, Ratna Prabha, Vivek Keshri, P.C. AbhilashMicrocystin-LR (MCYST-LR) is a well characterized hepatotoxic heptapeptide produced by various species of cyanobacteria including Microcystis aeruginosa. Burkholderia is a genus of bacteria with cyanobacterial toxins degrading property. This study predicts the structure of microcystin degrading MlrC-like protein from Burkholderia sp. strain CCGE1002 that has microcystin degradation capability. Binding interaction of MlrC-like protein with MCYST-LR was studied. Three-dimensional model of … …Current Research in Bioinformatics, Vol. 5, Issue 1 · 10 Jun 2016 · 8,069 accessesView PDFCite
Research ArticleOpen accessPhrase in the titleImproving Protein 3D Structure Prediction Accuracy using Dense Regions Areas of Secondary Structures in the Contact MapAmer F. Al-Badarneh, Mohammad A. Khalil, Mo'taz A. Al-HamiProblem Statement: The protein folding problem is a fundamental problem in structural molecular biology. This problem describes how a protein is transformed from its primary sequence (i.e., amino acid sequence) into the three dimensional structure (3D structure) for this sequence that determines the function of the protein. The 3D structure of a protein can be represented using a square symmetrical … …American Journal of Biochemistry and Biotechnology, Vol. 4, Issue 4 · 31 Dec 2008 · 7,533 accessesView PDFCite
Research ArticleOpen accessPhrase in the titleIn Silico Sequence Analysis, Structure Prediction and Function Annotation of Melanocortin 1 Receptor Gene (MC1R) from the Guppy Poecilia reticulataAbdul Khader Sultan Mohideen, Mehboob Asrar Sheriff, Kareem AltaffThe common guppy, Poecilia reticulata is one of the most popular aquarium fish used as a model organism in toxicology, embryology and genetical studies. Vibrant colors in males are a secondary sexual character which attracts the females for mating. Pigmentation in guppy is found to be linked with melanin synthesis. Melanocortin genes are involved in the synthesis of melanin pigments. … …American Journal of Biochemistry and Biotechnology, Vol. 11, Issue 4 · 17 Nov 2015 · 8,614 accessesView PDFCite
Research ArticleOpen accessEvery word in the titleLow-Homology Protein Structural Class Prediction from Secondary Structure Based on Visibility and Horizontal Visibility NetworkZhi-Qin Zhao, Liang Luo, Xiao-Yan LiuIn this study, based on the predicted secondary structures of proteins, we propose a new approach to predict protein structural classes (α,β,α/β,α+β) for three widely used low-homology data sets. Fist, we obtain two time siries from the chaos game representation of each predicted secondary structure; second, based on two time series, we construct visibility and horizontal visibility network, respectively and … …American Journal of Biochemistry and Biotechnology, Vol. 14, Issue 1 · 12 Mar 2018 · 9,668 accessesView PDFCite
Research ArticleOpen accessEvery word in the titleThai Speech Coding Based On Conjugate-Structure Algebraic Code Excited Linear Prediction AlgorithmSuphattharachai ChomphanProblem statement: In mobile communication, speech coding aims at compressing the speech with lowest bitrate and highest quality for standard languages such as English, German and French. As for other languages with different uttering styles, the encoded speech quality is not guaranteed at the same bitrate. The appropriate evaluation should be performed to develop the speech quality by applying some … …Journal of Computer Science, Vol. 7, Issue 1 · 14 Jan 2011 · 7,352 accessesView PDFCite
Research ArticleOpen accessIn the keywordsSpeech Compression for Noise-Corrupted Thai DialectsSuphattharachai ChomphanProblem statement: Dialects of Thai are quite different in the speaking styles. Environmental noises play an important role in corrupting the communication speech quality. Two factors affect the coded speech in the present speech communication. It is necessary to investigate how the two factors influence on the speech compression. Approach: In this study, the Multi-Pulse based Code Excited Linear Predictive … …American Journal of Applied Sciences, Vol. 9, Issue 3 · 9 Jan 2012 · 7,238 accessesView PDFCite
Research ArticleOpen accessIn the keywordsBioinformatics Analysis of Xyloglucan Endotransglycosylase/Hydrolase (XTH) Gene from Developing Xylem of a Tropical Timber Tree Neolamarckia CadambaTiong Shing Yiing, Ho Wei Seng, Pang Shek Ling, Ismail JusohThis study reported the isolation and in silico characterization of a full-length Xyloglucan endotransglycosylase/Hydrolase (XTH) cDNA from Neolamarckia cadamba, an important tropical light hardwood plantation tree species. XTH is considered as a key agent to regulate cell wall expansion and is believed to be responsible for the incorporation of newly synthesised xyloglucan into the wall matrix. The full-length of NcXTH … …Current Research in Bioinformatics, Vol. 3, Issue 1 · 6 Jan 2015 · 7,426 accessesView PDFCite
Research ArticleOpen accessIn the keywordsThai Expressive Speech Processing Technology: A ReviewSuphattharachai ChomphanProblem statement: The studies on Thai expressive speech or emotional speech have been conducted for years. Most of them are expected to analysis the characteristics of Thai expressive speech. However, the conclusive reviews on these studies have not been conducted for further study on the speech technology or application of Thai expressive speech. Approach: The review of research on Thai … …American Journal of Applied Sciences, Vol. 9, Issue 3 · 12 Jan 2012 · 6,733 accessesView PDFCite
Research ArticleOpen accessIn the abstractCoupling Analysis of Thermodynamic Equilibrium of Mass Transfer and Microbial Community Succession in Multiphase System of Dark Tea Solid-State FermentationZhanjun Liu, Jiawei Sun, Taotao Li et al.During the solid-state fermentation of dark tea, the limited material migration, the dynamic evolution of the thermodynamic equilibrium state, and the highly dynamic succession of the microbial community make it difficult to analyze the quality formation mechanism systematically. Traditional research has focused on microbial diversity or sensory quality analysis, lacking a systematic discussion on the regulatory effects of material migration … …American Journal of Biochemistry and Biotechnology, Vol. 22, Issue 3 · 10 Aug 2026 · 1,004 accessesView PDFCite