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127 articles for “Sequence Analysis”
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Research ArticleOpen accessPhrase in the titleGenetic Diversity of Leifsonia xyli Subsp. xyli Causing Ratoon Stunting Diseases of Sugarcane in Indonesia Using Intergenic Spacer Region Sequence AnalysisSisca Prayudani Usman, Abdul Latief Abadi et al.Leifsonia xyli subsp xyli (Lxx) is the cause of Ratoon Stunting Disease (RSD) on sugarcane and it considers as a quarantine pest in certain regions of Indonesia. RSD is a systemic disease that causes severe cane yield loss. Information about genetic diversity of this bacterial pathogen in Indonesia is limited. While global trading of sugar cane seed may facilitate the … …OnLine Journal of Biological Sciences, Vol. 25, Issue 2 · 23 Jun 2025 · 3,351 accessesView PDFCite
Research ArticleOpen accessPhrase in the titleIn Silico Sequence Analysis, Structure Prediction and Function Annotation of Melanocortin 1 Receptor Gene (MC1R) from the Guppy Poecilia reticulataAbdul Khader Sultan Mohideen, Mehboob Asrar Sheriff, Kareem AltaffThe common guppy, Poecilia reticulata is one of the most popular aquarium fish used as a model organism in toxicology, embryology and genetical studies. Vibrant colors in males are a secondary sexual character which attracts the females for mating. Pigmentation in guppy is found to be linked with melanin synthesis. Melanocortin genes are involved in the synthesis of melanin pigments. … …American Journal of Biochemistry and Biotechnology, Vol. 11, Issue 4 · 17 Nov 2015 · 8,614 accessesView PDFCite
Research ArticleOpen accessPhrase in the titleAn Efficient Distributed Bioinformatics Computing System for DNA Sequence Analysis on Encoding SystemMohammad Ibrahim Khan, Chotan SheelThis study provides an effective design of search technique of a distributed bioinformatics computing system for analysis of DNA sequences using OPTSDNA algorithm. This system could be used for disease detection, criminal forensic analysis, gene prediction, genetic system and protein analysis. Different types of distributed algorithms for the search and identification for DNA segments and repeat pattern in a given … …Current Research in Bioinformatics, Vol. 2, Issue 2 · 20 Dec 2013 · 6,931 accessesView PDFCite
Research ArticleOpen accessPhrase in the titleGenome Sequence Analysis: A SurveyHassan Mathkour, Muneer AhmadProblem statement: Sequence analysis problems are NP hard and need optimal solutions. Interesting problems include duplicate sequence detection, sequence matching by relevance, sequence analysis using approximate comparison in general or using tools i.e., Matlab and multi-lingual sequence analysis. The usefulness of these operations is highlighted and future expectations are described. Approach: This study described the concepts, tools, methodologies, algorithms being … …Journal of Computer Science, Vol. 5, Issue 9 · 30 Sep 2009 · 6,830 accessesView PDFCite
Research ArticleOpen accessPhrase in the titleSequence Analysis of Scaffold/Matrix Attachment Regions (S/MARs) From Human Embryonic Kidney and Chinese Hamster Ovary CellsNur Shazwani Mohd Pilus, Azrin Ahmad, Nurul Yuziana Mohd YusofBinding of intergenic Scaffold/Matrix Attachment Regions (S/MARs) to nuclear matrix proteins is believed to poise adjacent genes for transcription by forming chromatin loops. Vector constructs containing Scaffold/Matrix Attachment Regions (S/MAR) flanking the gene of interest, therefore, are able to enhance recombinant protein expression in mammalian cells. We compared two methods that are based on buffers containing 2M NaCl and Lithium-3,5-diidosalicylate … …OnLine Journal of Biological Sciences, Vol. 18, Issue 4 · 8 Oct 2018 · 7,630 accessesView PDFCite
Research ArticleOpen accessPhrase in the titleSequence Analysis of VP2 Gene of the Parvoviruses Isolated from Fecal Samples of Domestic Cats in Tehran, IranNegin Jahanbin, Shahram Jamshidi, Omid MadadgarPanleukopenia is a viral enteritis of high mortality rate in Feline population. It is caused by a small single-stranded DNA virus, belonging to the Family Parvoviridae, called Feline Panleukopenia Virus (FPV). Parvoviruses are capable of adapting to new hosts and can simply mutate like RNA viruses, resulting in the emergence of different strains with antigenic changes. Unlike the original Canine … …American Journal of Animal and Veterinary Sciences, Vol. 12, Issue 4 · 28 Oct 2017 · 7,693 accessesView PDFCite
Research ArticleOpen accessEvery word in the titleSequence Stratigraphic Analysis from Well Logs of an X-Field, Niger Delta, NigeriaGodwin Omokenu Emujakporue, Alphonsus Joseph EyoThe sequence stratigraphic analysis of the area was studied using well log information in order to determine the lithostratigraphy, chronostratigraphy, possible reservoir sands, age and depositional environment of the study area for opportunities that will support exploration program. The depositional environment penetrated by the wells interpreted from log signatures gave three major facies association. The blocky and coarsening upward (funnel … …Current Research in Geoscience, Vol. 6, Issue 2 · 11 Jul 2016 · 13,975 accessesView PDFCite
Research ArticleOpen accessEvery word in the titleCOMPARATIVE ANALYSIS OF INTER SIMPLE SEQUENCE REPEATS AND SIMPLE SEQUENCE REPEATS MARKERS: GENETIC ANALYSIS OF DESCHAMPSIA CESPITOSA POPULATIONS GROWING IN METAL CONTAMINATED REGIONS IN CANADAK.K. Nkongolo, S. Gervais, P. Michael, Y. ZhouComparative studies conducted on the genetic variation of metal-tolerant populations and their non-metal-tolerant counterparts have been performed on numerous species using isozyme markers. Analysis of genetic differences among plant populations growing in heavy metal-contaminated and uncontaminated regions are limited. The main objectives of the present study were to compare ISSR and microsatellite markers in assessing genetic variation in D. cespitosa … …American Journal of Biochemistry and Biotechnology, Vol. 10, Issue 1 · 8 Apr 2014 · 7,286 accessesView PDFCite
Research ArticleOpen accessIn the keywordsCASE REPORT OF A PATIENT WITH RARE P.ARG136CYS (APOE2*) MUTATION IN APOLIPOPROTEIN E GENEJana Lisyova, Jan Chandoga, Stanislav Oravec et al.Apolipoprotein E (apoE) is a polymorphic glycoprotein associated with plasma lipoproteins and plays an essential role in the metabolism and clearance of plasma lipids. ApoE can represent the major genetic risk factor in development of premature atherosclerosis, coronary heart disease and late-onset familial and sporadic Alzheimer’s Disease (AD). We present a case report of a 51-year old male with suspected … …OnLine Journal of Biological Sciences, Vol. 14, Issue 1 · 9 Jan 2014 · 7,295 accessesView PDFCite
Research ArticleOpen accessIn the keywordsThe Use of Taguchi Method to Determine Factors Affecting the Performance of Destination Sequence Distance Vector Routing Protocol in Mobile Ad Hoc NetworksHazura. Mohamed, Muhammad Hisyam Lee, Mazalan Sarahintu et al.In this study, Taguchi method was used to identify the several factors that may affect the performance of Destination Sequence Distance Vector (DSDV) routing protocol. The performance of DSDV routing protocol in mobile ad hoc networks were greatly influence by factors such as node speed, node pause time and traffic load. Problem statement: By using orthogonal experimental design and analysis … …Journal of Mathematics and Statistics, Vol. 4, Issue 4 · 31 Dec 2008 · 7,797 accessesView PDFCite