47 articles for “Analysis of ITS Sequence”

Research ArticleOpen accessEvery word in the titleA Novel 2D Graphical Representation and its Application in the Similarities/Dissimilarities Analysis of Protein SequencesXianyou ZhuIn this study, a novel 2D graphical representation of protein sequences is proposed based on the physicochemical feature pK2 of amino acids first and then, on the basis of the newly given 2D graphical representation, a new concept of feature appearance model is introduced to analyze the similarity/dissimilarity of protein sequences. Finally, Theoretical and simulation results show that the newly … …American Journal of Biochemistry and Biotechnology, Vol. 12, Issue 1 · 17 Mar 2016 · 6,964 accessesView PDF Cite

Research ArticleOpen accessIn the keywordsSeparation and Identification of Two Fungal Strains in Stored MaizeXiaoyu Yue, Lynne McLandsborough, Jian Zou, Xueqin GaoThe microbiological spoilage of stored grain is important for human health and economic loss. Two major predominant grain spoilage fungi (M15 and M16) were isolated from maize from a granary in China. Morphological observation of the fungal isolates, analysis of their ITS sequences and construction of their phylogenetic trees were conducted on these two strains, which were identified as Fusarium … …American Journal of Biochemistry and Biotechnology, Vol. 13, Issue 3 · 3 Aug 2017 · 7,331 accessesView PDF Cite

Research ArticleOpen accessIn the abstractMolecular Identification and Antioxidant Profiling of Penicillium heteringtonii EUA-017 from Mangrove (Avicennia alba) in West Sumatra, IndonesiaAnthoni Agustien, Djong Hon Tjong, Yetria Rilda et al.Mangrove ecosystems harbor diverse endophytic fungi that produce bioactive secondary metabolites with potential antioxidant activities. This study aimed to identify an endophytic fungal isolate (EUA-017) from Avicennia alba mangroves in West Sumatra, Indonesia, and characterize its antioxidant metabolites. Molecular identification was performed using internal transcribed spacer (ITS) region sequencing. Secondary metabolites from ethyl acetate extracts were characterized using Fourier-transform infrared … …OnLine Journal of Biological Sciences, Vol. 25, Issue 4 · 25 Mar 2026 · 1,410 accessesView PDF Cite

Research ArticleOpen accessIn the abstractEscalating SVM-Efficiency by Sequential QP LP and Slack Variable AnalysisAmit Kumar Kundu, Rezaul Karim, Ali Ahmed AveSupport Vector Machine (SVM) is a highly attractive algorithm among many machine learning models due to its generalization power and classification performance based on sound mathematical formulation being convex that offers global minimum. However, despite being sparse, its high classification cost from kernel execution with Support Vectors (SVs) reduces the user's interest when there are hard computational constraints in the … …Journal of Computer Science, Vol. 19, Issue 10 · 6 Sep 2023 · 5,913 accessesView PDF Cite

Review ArticleOpen accessIn the abstractThe Popular Fuzzy-TOPSIS as the Main Method for Decision Model: An Object-Driven Model for Bibliometric-Based Literature ReviewDitdit Nugeraha UtamaFuzzy logic serves as a computational modeling method, particularly prominent in the research domain of decision models. To assess the prevalent trends in the utilization of fuzzy logic in the research landscape of decision models and its common combinations with other methods, a conceptual model for article review was developed. This study involved three simple stages: Bibliometric analysis, article review … …Journal of Computer Science, Vol. 20, Issue 11 · 11 Sep 2024 · 4,811 accessesView PDF Cite

Research ArticleOpen accessIn the abstractA Meat-Derived Lactic Acid Bacteria, Lactobacillus plantarum IIA, Expresses a Functional Parvulin-Like Protein with Unique Structural PropertyCahyo Budiman, Irma Isnafia Arief, Fernandes Opook, Muhammad YusufThe genome sequence of a Lactic Acid Bacterium (LAB) Lactobacillus plantarum IIA contains a single gene encoding a parvulin-like protein (Par-LpIIA). This protein belongs to Peptidyl Prolyl cis-trans Isomerase (PPIase) family proteins that catalyze a slow cis-trans isomerization of cis prolyl bond during protein folding. This study aims to provide molecular and biochemical evidences of the existence of Par-LpIIA in … …OnLine Journal of Biological Sciences, Vol. 21, Issue 1 · 26 Feb 2021 · 7,023 accessesView PDF Cite

Research ArticleOpen accessIn the abstractComparative Analysis of Deep Learning Models for Multi-Step Prediction of Financial Time SeriesSaugat Aryal, Dheynoshan Nadarajah, Prabath Lakmal Rupasinghe et al.Financial time series prediction has been a key topic of interest among researchers considering the complexity of the domain and also due to its significant impact on a wide range of applications. In contrast to one-step ahead prediction, multi-step forecasting is more desirable in the industry but the task is more challenging. In recent days, advancement in deep learning has … …Journal of Computer Science, Vol. 16, Issue 10 · 27 Oct 2020 · 6,967 accessesView PDF Cite

Research ArticleOpen accessIn the abstractCharacterization of a Multi-Metal Resistant Bacillus cereus Strain TWSL_5 and it’s Bioremediation Potential for Cr, Pb, Zn and FeWeerasingha Mudiyanselage Nilmini Hasintha Kumari, Naduviladath Vishvanath Chandrasekharan, Champika Dilrukshi WijayarathnaAn effluent sample collected from a textile dyeing factory was screened to isolate metal resistant endogenous bacteria using standard microbiology techniques. A bacterium with the highest metal resistance was characterized by 16S rRNA gene sequencing and the bacterial genome was screened for any possible metal resistant genes using the Polymerase Chain Reaction (PCR). The bioremoval ability of the isolate was … …American Journal of Environmental Sciences, Vol. 17, Issue 3 · 15 Jul 2021 · 6,443 accessesView PDF Cite

Research ArticleOpen accessIn the abstractCharacteristics of Antagonistic Activity of Two Trichoderma Species New to Kazakhstan Against Soil PathogensYelena Rakhimova, Assem Assylbek, Lyazzat Kyzmetova et al.The high efficiency of representatives of the Trichoderma genus in suppressing a wide range of plant pathogens contributes to the conduct of large-scale research on the search for local strains. The purpose of this study is to characterize the antagonistic activity of two Trichoderma species new to Kazakhstan (T. pararogersonii and T. rossicum) isolated from the rhizosphere of Picea schrenkiana … …OnLine Journal of Biological Sciences, Vol. 23, Issue 4 · 17 Oct 2023 · 4,456 accessesView PDF Cite

Research ArticleOpen accessIn the abstractFunctional Role of Vitelline Glands and Mehlis Gland in the Process of Resistant Egg Shell Formation in TrematodesRimma UaliyevaThe study of the functional morphology of the reproductive system of trematodes, as well as its individual parts, provides an opportunity to solve an important problem that plays a huge role in theoretical and practical terms as the directed regulation of the fecundity of endoparasites. The article is devoted to the study of the functional role of vitelline glands and … …OnLine Journal of Biological Sciences, Vol. 23, Issue 2 · 28 Feb 2023 · 6,367 accessesView PDF Cite