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127 articles for “Sequence Analysis”
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Research ArticleOpen accessIn the abstractNucleotide Sequence of the Coat Protein Gene of the Malaysian Passiflora Virus and its 3' Non-Coding RegionNorzihan Abdullah, Ismanizan Ismail, Vilasini Pillai et al.Problem statement: In this study, we identified the full length Coat Protein (CP) gene of the Malaysian Passiflora Virus (MPV) and its 3' non-coding region. The CP gene of the MPV contained 285 amino acid residues. Approach: Pairwise comparison of the MPV CP region with four other potyviruses, namely East Asian Passiflora Virus (EAPV), Passionfruit Woodiness Virus (PWV), Bean Common … …American Journal of Applied Sciences, Vol. 6, Issue 9 · 30 Sep 2009 · 7,725 accessesView PDFCite
Research ArticleOpen accessIn the abstractMolecular Characterization of a Phytoplasma Associated with Coconut Yellow Decline (CYD) in MalaysiaN. Nejat, K. Sijam, S. N.A. Abdullah et al.Problem statement: Molecular methods have been used to detect phytoplasma in Malayan Red Dwarf (MRD) ecotype of coconut for the first time in Malaysia. Detect phytoplasma from coconut showing yellowing symptoms by nested PCR and Classify phytoplasma associated with disease of coconut palms, based on analysis of 16S rRNA gene operon sequences and virtual RFLP. Approach: Twenty MRD symptomatic palms … …American Journal of Applied Sciences, Vol. 6, Issue 7 · 31 Jul 2009 · 7,923 accessesView PDFCite
Research ArticleOpen accessIn the abstractTarget Identification in Ory S1 Pollen Protein Allergen from Oryza sativa in the Course of Construction of Hypoallergenic VaccinesRuchi Sharma, A. K. SinghProblem statement: Recombinant-based approaches are mostly focused on genetic modification of allergens to produce molecules with reduced allergenic activity and conserved antigenicity, such as hypoallergens. Recombinant allergens represent promising tools for diagnosis and therapy of type I allergy. This approach was probably feasible with every allergen with known amino acid sequence. Approach: The primary aim of this study was to … …American Journal of Infectious Diseases, Vol. 5, Issue 2 · 30 Jun 2009 · 7,444 accessesView PDFCite
Research ArticleOpen accessIn the abstractImproving Protein 3D Structure Prediction Accuracy using Dense Regions Areas of Secondary Structures in the Contact MapAmer F. Al-Badarneh, Mohammad A. Khalil, Mo'taz A. Al-HamiProblem Statement: The protein folding problem is a fundamental problem in structural molecular biology. This problem describes how a protein is transformed from its primary sequence (i.e., amino acid sequence) into the three dimensional structure (3D structure) for this sequence that determines the function of the protein. The 3D structure of a protein can be represented using a square symmetrical … …American Journal of Biochemistry and Biotechnology, Vol. 4, Issue 4 · 31 Dec 2008 · 7,537 accessesView PDFCite
Research ArticleOpen accessIn the abstractSeparating Low Pass and High Pass Frequencies in the Image Without loosing informationZ. Alqadi, J. Musbah, A. L. MontengroGranulometries are morphological image analysis tools that are particularly useful for estimating object sizes in binary and grayscale images, or for characterizing textures based on their pattern spectra. There are many applications that morphology can be applied to. Some morphological operations like dilation, erosion and open-close are used in image and video processing, but with no application to pre-processing for … …Journal of Computer Science, Vol. 4, Issue 10 · 31 Oct 2008 · 6,430 accessesView PDFCite
Research ArticleOpen accessIn the abstractNimble Protein Sequence Alignment in Grid (NPSAG)K. Somasundaram, S. RadhakrishnanIn Bio-Informatics application, the analysis of protein sequence is a kind of computation driven science which has rapidly and quickly growing biological data. Also databases used in these applications are heterogeneous in nature and alignment of protein sequence using physical techniques is expensive, slow and results are not always guaranteed/accurate. So this application requires cross-platform, cost-effective and more computing power … …Journal of Computer Science, Vol. 4, Issue 1 · 31 Jan 2008 · 6,924 accessesView PDFCite
Research ArticleOpen accessIn the abstractPrediction of a Putative Functional Region in the Human Bax Protein by Computational AnalysisMaría Sánchez-Aguilar, Laurence A. Marchat, Absalom ZamoranoStructural domains are relevant elements for interactions between Bcl-2 family members to regulate apoptosis and cell survival. Although BH1-BH4 domains can be identified by their sequence and selective occurrence in Bcl-2-family members, structural regions have not been entirely determined yet. The functional residues of Bax, the most representative pro-apoptotic protein of the human Bcl-2 family, remain almost unknown. Here, we … …American Journal of Infectious Diseases, Vol. 3, Issue 2 · 30 Jun 2007 · 7,235 accessesView PDFCite
Research ArticleOpen accessIn the abstractCharacteristics of Antagonistic Activity of Two Trichoderma Species New to Kazakhstan Against Soil PathogensYelena Rakhimova, Assem Assylbek, Lyazzat Kyzmetova et al.The high efficiency of representatives of the Trichoderma genus in suppressing a wide range of plant pathogens contributes to the conduct of large-scale research on the search for local strains. The purpose of this study is to characterize the antagonistic activity of two Trichoderma species new to Kazakhstan (T. pararogersonii and T. rossicum) isolated from the rhizosphere of Picea schrenkiana … …OnLine Journal of Biological Sciences, Vol. 23, Issue 4 · 17 Oct 2023 · 4,461 accessesView PDFCite
Research ArticleOpen accessIn the abstractFunctional Role of Vitelline Glands and Mehlis Gland in the Process of Resistant Egg Shell Formation in TrematodesRimma UaliyevaThe study of the functional morphology of the reproductive system of trematodes, as well as its individual parts, provides an opportunity to solve an important problem that plays a huge role in theoretical and practical terms as the directed regulation of the fecundity of endoparasites. The article is devoted to the study of the functional role of vitelline glands and … …OnLine Journal of Biological Sciences, Vol. 23, Issue 2 · 28 Feb 2023 · 6,371 accessesView PDFCite
Research ArticleOpen accessIn the abstractCharacterization of a Multi-Metal Resistant Bacillus cereus Strain TWSL_5 and it’s Bioremediation Potential for Cr, Pb, Zn and FeWeerasingha Mudiyanselage Nilmini Hasintha Kumari, Naduviladath Vishvanath Chandrasekharan, Champika Dilrukshi WijayarathnaAn effluent sample collected from a textile dyeing factory was screened to isolate metal resistant endogenous bacteria using standard microbiology techniques. A bacterium with the highest metal resistance was characterized by 16S rRNA gene sequencing and the bacterial genome was screened for any possible metal resistant genes using the Polymerase Chain Reaction (PCR). The bioremoval ability of the isolate was … …American Journal of Environmental Sciences, Vol. 17, Issue 3 · 15 Jul 2021 · 6,448 accessesView PDFCite