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33 articles for “Amino Acid Sequence”
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Research ArticleOpen accessIn the abstractHomology Modeling of Buffalo (Bubalus bubalis) Interferon-Tau ProteinIndu Joshi, Sunil Kumar, Arminder Kaur et al.Interferon-tau (IFNt) contributes towards maternal recognition of pregnancy in ruminants (like, cattle, buffalo, goat, giraffe). IFNt has been extensively studied in most of the ruminants except for buffalo Bubalus bubalis). The present study has been undertaken to predict the secondary structure of Interferon-tau in buffalo. The available amino acid sequence of bubaline IFNt (sequence database of SwissProt) was subjected to … …Current Research in Bioinformatics, Vol. 1, Issue 2 · 17 Apr 2013 · 7,008 accessesView PDFCite
Research ArticleOpen accessIn the abstractMolecular Study of Energy Related Mitochondrial Genes in Arabian and Bactrian CamelsMohamed M. Ahmed, Samir A. El-Shazly, Samy M. Sayed, Sayed A.M. AmerThe single-humped camel, Camelus dromedaries inhabiting Afro-Arabia and the double-humped camel, Camelus bactrianus inhabiting central Asia are the only species in their genus. The present study aimed to amplify and partially sequence the mitochondrial DNA genes encoding for NADH dehydrogenase subunit 1, cytochrome c oxidase subunit 1, ATP synthase subunit 6 (ATP6), cytochrome b and displacement region (d-loop) in the … …American Journal of Biochemistry and Biotechnology, Vol. 9, Issue 1 · 18 Mar 2013 · 7,370 accessesView PDFCite
Research ArticleOpen accessIn the abstractA Cyanobacterium Synechocystis sp. PCC 6803 Glutaredoxin Gene (slr1562) Protects Escherichia coli against Abiotic StressesAhmed Gaber, Salah El-Din El-AssalProblem statement: Glutaredoxins (GRXs) are ubiquitous small heat stable glutathione-dependent oxidoreductase enzymes that play a crucial role in plant development and response to oxidative stress. Approach: Cyanobacterium Synechocystis strain PCC 6803 contains two genes (slr1562 and ssr2061) encoding glutaredoxins. In the present investigation the slr1562 gene (grxC) was isolated and characterized. Results: The results revealed that the amino acid sequence … …American Journal of Agricultural and Biological Sciences, Vol. 7, Issue 1 · 5 Mar 2012 · 7,586 accessesView PDFCite
Research ArticleOpen accessIn the abstractDevelopment of Neighbors Atomic Coordinate Tables and Plot-Graphical Representation for Tertiary Structure in ProteinsHamed Fawareh, Jehad Q. Odeh, Nawal Al-OmoushProblem statement: Contact map prediction is an interesting method for its application in fold recognition and protein tertiary structure determination. Approach: This study developed a method to predict a protein tertiary structure from the amino acid sequence using contact map. The method showed prediction a protein in a binary space of exposure states. The approach produced several procedures to finds … …Journal of Computer Science, Vol. 6, Issue 6 · 30 Jun 2010 · 6,894 accessesView PDFCite
Research ArticleOpen accessIn the abstractNucleotide Sequence of the Coat Protein Gene of the Malaysian Passiflora Virus and its 3' Non-Coding RegionNorzihan Abdullah, Ismanizan Ismail, Vilasini Pillai et al.Problem statement: In this study, we identified the full length Coat Protein (CP) gene of the Malaysian Passiflora Virus (MPV) and its 3' non-coding region. The CP gene of the MPV contained 285 amino acid residues. Approach: Pairwise comparison of the MPV CP region with four other potyviruses, namely East Asian Passiflora Virus (EAPV), Passionfruit Woodiness Virus (PWV), Bean Common … …American Journal of Applied Sciences, Vol. 6, Issue 9 · 30 Sep 2009 · 7,725 accessesView PDFCite
Research ArticleOpen accessIn the abstractTarget Identification in Ory S1 Pollen Protein Allergen from Oryza sativa in the Course of Construction of Hypoallergenic VaccinesRuchi Sharma, A. K. SinghProblem statement: Recombinant-based approaches are mostly focused on genetic modification of allergens to produce molecules with reduced allergenic activity and conserved antigenicity, such as hypoallergens. Recombinant allergens represent promising tools for diagnosis and therapy of type I allergy. This approach was probably feasible with every allergen with known amino acid sequence. Approach: The primary aim of this study was to … …American Journal of Infectious Diseases, Vol. 5, Issue 2 · 30 Jun 2009 · 7,444 accessesView PDFCite
Research ArticleOpen accessIn the abstractImproving Protein 3D Structure Prediction Accuracy using Dense Regions Areas of Secondary Structures in the Contact MapAmer F. Al-Badarneh, Mohammad A. Khalil, Mo'taz A. Al-HamiProblem Statement: The protein folding problem is a fundamental problem in structural molecular biology. This problem describes how a protein is transformed from its primary sequence (i.e., amino acid sequence) into the three dimensional structure (3D structure) for this sequence that determines the function of the protein. The 3D structure of a protein can be represented using a square symmetrical … …American Journal of Biochemistry and Biotechnology, Vol. 4, Issue 4 · 31 Dec 2008 · 7,537 accessesView PDFCite
Research ArticleOpen accessIn the abstractRat Cardiomyocytes Express a Classical Epithelial Beta-DefensinAnnika Linde, Gerald H. Lushington, Frank Blecha, Tonatiuh MelgarejoBeta-defensins (BDs) are classical epithelial antimicrobial peptides of immediate importance in innate host defense. Since recent studies have suggested that certain BDs are also expressed in non-traditional tissues, including whole heart homogenate, and because effector molecules of innate immunity and inflammation can influence the development of certain cardiovascular disease processes, we hypothesized that BDs are produced by cardiomyocytes as a … …American Journal of Animal and Veterinary Sciences, Vol. 3, Issue 1 · 31 Mar 2008 · 7,000 accessesView PDFCite
Research ArticleOpen accessIn the abstractEffects of Reduced- Protein Diets at Constant Total Sulfur Amino Acids: Lysine Ratio on Pullet Development and Subsequent Laying Hen PerformanceFariborz Khajali, M. Faraji, Saeid Karimi DehkordiThe effect of using a low protein regime in pullet development and subsequent layer performance was studied. The experiment consisted of two periods of rearing and laying. Two hundred and sixty Hy-line W36 chicks were used. In the rearing period, dietary protein level and ME content series of the control group used during starter (18-42), grower (43-63) and developer (64-119d) … …American Journal of Animal and Veterinary Sciences, Vol. 2, Issue 4 · 31 Dec 2007 · 7,072 accessesView PDFCite
Research ArticleOpen accessIn the abstractThe Meaning of a Redundant Codon: There is Protein Folding Information in Nucleic Acids in Addition to the Genetic CodeJan C. Biro, Josephine M.K. BiroAll the information necessary for protein folding is supposed to be present in the amino acid sequence. It is still not possible to provide specific ab initio structure predictions by bioinformatical methods. It is suspected that additional folding information is present in protein coding nucleic acid sequences, which is not represented by the known genetic code. Nucleic acid subsequences comprising … …American Journal of Biochemistry and Biotechnology, Vol. 2, Issue 1 · 31 Mar 2006 · 8,297 accessesView PDFCite